Projects

gebaSpike: Python Spike Sorting Package (Tint/Axona Data) Draft

If you are recording electrophysiology data, you will at one point likely have to perform some spike sorting. Spike sorting is when the user distingu…

BinMSGUI - Sorting Axona Data with MountainSort Draft

BinMSGUI1 is a Python Graphical User Interface (GUI) that I developed in order to test MountainSort's2,3 (MS) spike sorting algorithm. We use Axona's…

BinConverter Draft

BinConverter is a Python Graphical User Interface (GUI) that converts the raw data (.bin) recorded from Axona's DacqUSB1 to the Tint format. Although…

MountainSort with Windows 10 Draft

Our lab has been using MoutainSort/MountainLab1 as a spike sorting algorithm (previously used KlustaKwik). In the referenced Neuron paper, Chung et a…

BatchTINTV3 - Batch Spike Sorting Solution for Tint Draft

A few years ago (starting in May of 2016) I was tasked with optimizing the way electrophysiology (ephys) data is sorted in the lab. If you happen to …

hfoGUI: Tint LFP Data Visualization Draft

hfoGUI is a Python package that was originally designed so that I could visualize High Frequency Oscillations (HFO's) within the in-vivo electrophysi…

Python: an Introduction Draft

This project will serve as an introduction to Python as a language. Oddly enough in college I was not taught Python, our coding experience was essent…